IL_3JBO_138
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GAAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_138 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.1148
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
3JBO|1|AA|G|1593
3JBO|1|AA|A|1594
3JBO|1|AA|A|1595
3JBO|1|AA|G|1596
3JBO|1|AA|U|1597
3JBO|1|AA|A|1598
3JBO|1|AA|G|1599
*
3JBO|1|AA|C|2647
3JBO|1|AA|G|2648
3JBO|1|AA|A|2649
3JBO|1|AA|A|2650
3JBO|1|AA|A|2651
3JBO|1|AA|C|2652
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AF
- 60S ribosomal protein uL4
- Chain AW
- 60S ribosomal protein uL22
Coloring options: