IL_3JBO_139

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUCAAC*GAAC

Length

10 nucleotides

Bulged bases

3JBO|1|AA|A|1663

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_139 not in the Motif Atlas

Geometric match to IL_5TBW_062

Geometric discrepancy: 0.126

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

3JBO|1|AA|G|1649
3JBO|1|AA|U|1650
3JBO|1|AA|C|1651
3JBO|1|AA|A|1652
3JBO|1|AA|A|1653
3JBO|1|AA|C|1654
*
3JBO|1|AA|G|1662
3JBO|1|AA|A|1663
3JBO|1|AA|A|1664
3JBO|1|AA|C|1665

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein eL19

Chain AW

60S ribosomal protein uL22

Chain Ae

60S ribosomal protein eL39