IL_3JBO_143

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGAAC*GGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_143 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.1661

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3JBO|1|AA|U|1800
3JBO|1|AA|G|1801
3JBO|1|AA|A|1802
3JBO|1|AA|A|1803
3JBO|1|AA|C|1804
*
3JBO|1|AA|G|2028
3JBO|1|AA|G|2029
3JBO|1|AA|G|2030
3JBO|1|AA|A|2031
3JBO|1|AA|A|2032

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A1

60S ribosomal protein eL27

Chain AD

60S ribosomal protein uL2

Chain Aa

60S ribosomal protein eL34