IL_3JBO_176

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGUG*CUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_176 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2832

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

3JBO|1|AA|G|2744
3JBO|1|AA|G|2745
3JBO|1|AA|U|2746
3JBO|1|AA|G|2747
*
3JBO|1|AA|C|2801
3JBO|1|AA|U|2802
3JBO|1|AA|A|2803
3JBO|1|AA|C|2804

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA