IL_3JBO_196

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAAUU*AAG

Length

8 nucleotides

Bulged bases

3JBO|1|AA|A|3477

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_196 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.177

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

3JBO|1|AA|C|3433
3JBO|1|AA|A|3434
3JBO|1|AA|A|3435
3JBO|1|AA|U|3436
3JBO|1|AA|U|3437
*
3JBO|1|AA|A|3476
3JBO|1|AA|A|3477
3JBO|1|AA|G|3478

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein eL24

Chain AE

60S ribosomal protein uL3

Chain AM

60S ribosomal protein uL14