IL_3JBO_197

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UACAG*CGAAG

Length

10 nucleotides

Bulged bases

3JBO|1|AA|C|3442

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_197 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.1928

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

3JBO|1|AA|U|3440
3JBO|1|AA|A|3441
3JBO|1|AA|C|3442
3JBO|1|AA|A|3443
3JBO|1|AA|G|3444
*
3JBO|1|AA|C|3469
3JBO|1|AA|G|3470
3JBO|1|AA|A|3471
3JBO|1|AA|A|3472
3JBO|1|AA|G|3473

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein eL24

Chain A7

60S ribosomal protein eL31

Chain AE

60S ribosomal protein uL3