IL_3JBO_206

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

ACUG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_206 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.2901

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3JBO|1|AA|A|3694
3JBO|1|AA|C|3695
3JBO|1|AA|U|3696
3JBO|1|AA|G|3697
*
3JBO|1|AA|C|3705
3JBO|1|AA|U|3706
3JBO|1|AA|U|3707
3JBO|1|AA|U|3708

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein eL31

Chain AE

60S ribosomal protein uL3

Chain AW

60S ribosomal protein uL22