IL_3JBO_209

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUG*CUUAUC

Length

9 nucleotides

Bulged bases

3JBO|1|AA|U|3769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_209 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.2809

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

3JBO|1|AA|G|3720
3JBO|1|AA|U|3721
3JBO|1|AA|G|3722
*
3JBO|1|AA|C|3765
3JBO|1|AA|U|3766
3JBO|1|AA|U|3767
3JBO|1|AA|A|3768
3JBO|1|AA|U|3769
3JBO|1|AA|C|3770

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein eL31

Chain AE

60S ribosomal protein uL3