IL_3JBO_224
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 3JBO|1|A|C|1375, 3JBO|1|A|U|1678, 3JBO|1|A|G|1681
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_224 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1813
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JBO|1|A|U|1373
3JBO|1|A|G|1374
3JBO|1|A|C|1375
3JBO|1|A|A|1376
3JBO|1|A|U|1377
3JBO|1|A|G|1378
3JBO|1|A|G|1379
*
3JBO|1|A|U|1676
3JBO|1|A|C|1677
3JBO|1|A|U|1678
3JBO|1|A|G|1679
3JBO|1|A|U|1680
3JBO|1|A|G|1681
3JBO|1|A|A|1682
3JBO|1|A|U|1683
3JBO|1|A|G|1684
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein uS3
- Chain N
- 40S ribosomal protein uS10
- Chain O
- 40S ribosomal protein eS10
- Chain T
- 40S ribosomal protein uS14
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