IL_3JBP_010

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

3JBP|1|A|A|116, 3JBP|1|A|G|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_010 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1988

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

3JBP|1|A|U|115
3JBP|1|A|A|116
3JBP|1|A|G|117
3JBP|1|A|U|118
*
3JBP|1|A|A|306
3JBP|1|A|G|307

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein eS4

Chain L

40S ribosomal protein eS8

Chain V

40S ribosomal protein uS17