IL_3JBP_030
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBP_030 not in the Motif Atlas
- Geometric match to IL_4V88_418
- Geometric discrepancy: 0.136
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
3JBP|1|A|C|634
3JBP|1|A|G|635
3JBP|1|A|U|636
3JBP|1|A|A|637
3JBP|1|A|G|638
*
3JBP|1|A|U|1037
3JBP|1|A|C|1038
3JBP|1|A|A|1039
3JBP|1|A|A|1040
3JBP|1|A|G|1041
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 40S ribosomal protein uS8
- Chain Q
- 40S ribosomal protein uS12
- Chain U
- 40S ribosomal protein uS15
- Chain V
- 40S ribosomal protein uS17
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