IL_3JBP_123
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CAGGUAG*CCAAUAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBP_123 not in the Motif Atlas
- Geometric match to IL_5TBW_038
- Geometric discrepancy: 0.1487
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
3JBP|1|AA|C|1113
3JBP|1|AA|A|1114
3JBP|1|AA|G|1115
3JBP|1|AA|G|1116
3JBP|1|AA|U|1117
3JBP|1|AA|A|1118
3JBP|1|AA|G|1119
*
3JBP|1|AA|C|1175
3JBP|1|AA|C|1176
3JBP|1|AA|A|1177
3JBP|1|AA|A|1178
3JBP|1|AA|U|1179
3JBP|1|AA|A|1180
3JBP|1|AA|G|1181
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 60S ribosomal protein eL29
- Chain A5
- 60S ribosomal protein uL30
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AQ
- 60S ribosomal protein uL16
- Chain AR
- 60S ribosomal protein uL18
- Chain AU
- 60S ribosomal protein eL20
- Chain AV
- 60S ribosomal protein eL21
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