IL_3JBP_135
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CUCAUGAG*CUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 3JBP|1|AA|U|1319, 3JBP|1|AA|G|1320, 3JBP|1|AA|A|1444, 3JBP|1|AA|A|1446
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBP_135 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.1426
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3JBP|1|AA|C|1315
3JBP|1|AA|U|1316
3JBP|1|AA|C|1317
3JBP|1|AA|A|1318
3JBP|1|AA|U|1319
3JBP|1|AA|G|1320
3JBP|1|AA|A|1321
3JBP|1|AA|G|1322
*
3JBP|1|AA|C|1442
3JBP|1|AA|U|1443
3JBP|1|AA|A|1444
3JBP|1|AA|A|1445
3JBP|1|AA|A|1446
3JBP|1|AA|G|1447
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AH
- 60S ribosomal protein uL6
- Chain AK
- 60S ribosomal protein uL13
- Chain AN
- 60S ribosomal protein eL14
- Chain AU
- 60S ribosomal protein eL20
- Chain Af
- 60S ribosomal protein eL40
Coloring options: