IL_3JBP_143

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GAAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_143 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.1093

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

3JBP|1|AA|G|1593
3JBP|1|AA|A|1594
3JBP|1|AA|A|1595
3JBP|1|AA|G|1596
3JBP|1|AA|U|1597
3JBP|1|AA|A|1598
3JBP|1|AA|G|1599
*
3JBP|1|AA|C|2647
3JBP|1|AA|G|2648
3JBP|1|AA|A|2649
3JBP|1|AA|A|2650
3JBP|1|AA|A|2651
3JBP|1|AA|C|2652

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AF

60S ribosomal protein uL4

Chain AW

60S ribosomal protein uL22