IL_3JBP_197

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UGAC*GAUUAAA

Length

11 nucleotides

Bulged bases

3JBP|1|AA|U|3526, 3JBP|1|AA|A|3529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_197 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.3363

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

3JBP|1|AA|U|3390
3JBP|1|AA|G|3391
3JBP|1|AA|A|3392
3JBP|1|AA|C|3393
*
3JBP|1|AA|G|3524
3JBP|1|AA|A|3525
3JBP|1|AA|U|3526
3JBP|1|AA|U|3527
3JBP|1|AA|A|3528
3JBP|1|AA|A|3529
3JBP|1|AA|A|3530

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein uL3

Chain AK

60S ribosomal protein uL13