IL_3JBU_009

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GGAAA*UGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_009 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3328

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

3JBU|1|A|G|127
3JBU|1|A|G|128
3JBU|1|A|A|129
3JBU|1|A|A|130
3JBU|1|A|A|131
*
3JBU|1|A|U|231
3JBU|1|A|G|232
3JBU|1|A|C|233
3JBU|1|A|C|234

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20