IL_3JBU_145

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

3JBU|1|b|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBU_145 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1299

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

3JBU|1|b|C|2636
3JBU|1|b|U|2637
3JBU|1|b|G|2638
3JBU|1|b|A|2639
3JBU|1|b|G|2640
*
3JBU|1|b|C|2774
3JBU|1|b|G|2775
3JBU|1|b|A|2776
3JBU|1|b|G|2777
3JBU|1|b|A|2778
3JBU|1|b|U|2779
3JBU|1|b|G|2780
3JBU|1|b|A|2781
3JBU|1|b|G|2782

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L13