IL_3JBV_129

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

3JBV|1|b|A|1801, 3JBV|1|b|C|1816, 3JBV|1|b|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_129 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.1076

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3JBV|1|b|U|1798
3JBV|1|b|G|1799
3JBV|1|b|C|1800
3JBV|1|b|A|1801
3JBV|1|b|A|1802
3JBV|1|b|A|1803
3JBV|1|b|C|1804
*
3JBV|1|b|G|1813
3JBV|1|b|G|1814
3JBV|1|b|A|1815
3JBV|1|b|C|1816
3JBV|1|b|G|1817
3JBV|1|b|U|1818
3JBV|1|b|A|1819
3JBV|1|b|U|1820
3JBV|1|b|A|1821

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2