IL_3JBV_157

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

3JBV|1|b|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_157 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1388

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

3JBV|1|b|C|2636
3JBV|1|b|U|2637
3JBV|1|b|G|2638
3JBV|1|b|A|2639
3JBV|1|b|G|2640
*
3JBV|1|b|C|2774
3JBV|1|b|G|2775
3JBV|1|b|A|2776
3JBV|1|b|G|2777
3JBV|1|b|A|2778
3JBV|1|b|U|2779
3JBV|1|b|G|2780
3JBV|1|b|A|2781
3JBV|1|b|G|2782

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain d

50S ribosomal protein L11

Chain j

50S ribosomal protein L13