IL_3JBV_217

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

GGCC*GGUAC

Length

9 nucleotides

Bulged bases

3JBV|1|b|A|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBV_217 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3509

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

3JBV|1|b|G|2838
3JBV|1|b|G|2839
3JBV|1|b|C|2840
3JBV|1|b|C|2841
*
3JBV|1|b|G|2876
3JBV|1|b|G|2877
3JBV|1|b|U|2878
3JBV|1|b|A|2879
3JBV|1|b|C|2880

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain d

50S ribosomal protein L11

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19