IL_3JCE_067

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

3JCE|1|A|A|1801, 3JCE|1|A|C|1816, 3JCE|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_067 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1001

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3JCE|1|A|U|1798
3JCE|1|A|G|1799
3JCE|1|A|C|1800
3JCE|1|A|A|1801
3JCE|1|A|A|1802
3JCE|1|A|A|1803
3JCE|1|A|C|1804
*
3JCE|1|A|G|1813
3JCE|1|A|G|1814
3JCE|1|A|A|1815
3JCE|1|A|C|1816
3JCE|1|A|G|1817
3JCE|1|A|U|1818
3JCE|1|A|A|1819
3JCE|1|A|U|1820
3JCE|1|A|A|1821

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA