IL_3JCE_081

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGAUG*CUUUAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_081 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3792

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

3JCE|1|A|U|2105
3JCE|1|A|U|2106
3JCE|1|A|G|2107
3JCE|1|A|A|2108
3JCE|1|A|U|2109
3JCE|1|A|G|2110
*
3JCE|1|A|C|2179
3JCE|1|A|U|2180
3JCE|1|A|U|2181
3JCE|1|A|U|2182
3JCE|1|A|A|2183
3JCE|1|A|A|2184

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L1

Chain 9

Transfer RNA; tRNA