IL_3JCE_185

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGC*GAUGG

Length

9 nucleotides

Bulged bases

3JCE|1|A|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCE_185 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2832

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3JCE|1|A|C|1768
3JCE|1|A|U|1769
3JCE|1|A|G|1770
3JCE|1|A|C|1771
*
3JCE|1|A|G|1980
3JCE|1|A|A|1981
3JCE|1|A|U|1982
3JCE|1|A|G|1983
3JCE|1|A|G|1984

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA