IL_3JCJ_040

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_040 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.2449

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

3JCJ|1|A|U|1018
3JCJ|1|A|U|1019
3JCJ|1|A|A|1020
3JCJ|1|A|A|1021
3JCJ|1|A|G|1022
3JCJ|1|A|U|1023
3JCJ|1|A|G|1024
*
3JCJ|1|A|C|1140
3JCJ|1|A|U|1141
3JCJ|1|A|A|1142
3JCJ|1|A|A|1143
3JCJ|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain I

50S ribosomal protein L13

Chain d

50S ribosomal protein L36