IL_3JCJ_178

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGCAAG*CAACCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_178 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.3861

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

3JCJ|1|A|G|874
3JCJ|1|A|G|875
3JCJ|1|A|C|876
3JCJ|1|A|A|877
3JCJ|1|A|A|878
3JCJ|1|A|G|879
*
3JCJ|1|A|C|898
3JCJ|1|A|A|899
3JCJ|1|A|A|900
3JCJ|1|A|C|901
3JCJ|1|A|C|902
3JCJ|1|A|C|903

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L16