IL_3JCJ_222

3D structure

PDB id

3JCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

3JCJ|1|A|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCJ_222 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.1889

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

3JCJ|1|A|U|2680
3JCJ|1|A|C|2681
3JCJ|1|A|A|2682
3JCJ|1|A|C|2683
3JCJ|1|A|U|2684
*
3JCJ|1|A|A|2725
3JCJ|1|A|A|2726
3JCJ|1|A|A|2727

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain J

50S ribosomal protein L14

Chain O

50S ribosomal protein L19