IL_3JCS_010

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUU*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_010 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.3705

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3JCS|1|1|A|161
3JCS|1|1|U|162
3JCS|1|1|U|163
3JCS|1|1|U|164
*
3JCS|1|1|A|291
3JCS|1|1|A|292
3JCS|1|1|C|293
3JCS|1|1|U|294

Current chains

Chain 1

26S alpha ribosomal RNA

Nearby chains

Chain G

ribosomal protein L8e

Chain a

ribosomal protein L29