IL_3JCS_051
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCAUUCG*CUUAAG
- Length
- 14 nucleotides
- Bulged bases
- 3JCS|1|1|U|1250, 3JCS|1|1|U|1253, 3JCS|1|1|U|1378, 3JCS|1|1|A|1380
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_051 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.2189
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3JCS|1|1|C|1246
3JCS|1|1|U|1247
3JCS|1|1|C|1248
3JCS|1|1|A|1249
3JCS|1|1|U|1250
3JCS|1|1|U|1253
3JCS|1|1|C|1254
3JCS|1|1|G|1255
*
3JCS|1|1|C|1376
3JCS|1|1|U|1377
3JCS|1|1|U|1378
3JCS|1|1|A|1379
3JCS|1|1|A|1380
3JCS|1|1|G|1381
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 4
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- ribosomal protein L6
- Chain H
- ribosomal protein L13
- Chain K
- ribosomal protein L14e
- Chain R
- ribosomal protein L20e
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