IL_3JCS_062
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGAG*CAACAG
- Length
- 11 nucleotides
- Bulged bases
- 3JCS|1|1|C|1740, 3JCS|1|1|A|1741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_062 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.122
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
3JCS|1|1|C|1640
3JCS|1|1|U|1641
3JCS|1|1|G|1642
3JCS|1|1|A|1643
3JCS|1|1|G|1644
*
3JCS|1|1|C|1737
3JCS|1|1|A|1738
3JCS|1|1|A|1739
3JCS|1|1|C|1740
3JCS|1|1|A|1741
3JCS|1|1|G|1742
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- 26S gamma ribosomal RNA
- Chain 7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- ribosomal protein L2
- Chain h
- ribosomal protein L34e
- Chain j
- ribosomal protein L37e
- Chain l
- ribosomal protein L39e
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