IL_3JCS_067
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAAA(OMG)G*CUAU
- Length
- 11 nucleotides
- Bulged bases
- 3JCS|1|2|A|68
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_067 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.5145
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
3JCS|1|2|A|66
3JCS|1|2|G|67
3JCS|1|2|A|68
3JCS|1|2|A|69
3JCS|1|2|A|70
3JCS|1|2|OMG|71
3JCS|1|2|G|72
*
3JCS|1|2|C|592
3JCS|1|2|U|593
3JCS|1|2|A|594
3JCS|1|2|U|595
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- 26S epsilon ribosomal RNA
- Chain B
- ribosomal protein L3
- Chain T
- ribosomal protein L22
- Chain e
- ribosomal protein L31e
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