IL_3JCS_076

3D structure

PDB id

3JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUCC*GA(OMG)(A2M)U

Length

9 nucleotides

Bulged bases

3JCS|1|2|A|570

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JCS_076 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2428

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3JCS|1|2|A|372
3JCS|1|2|U|373
3JCS|1|2|C|374
3JCS|1|2|C|375
*
3JCS|1|2|G|569
3JCS|1|2|A|570
3JCS|1|2|OMG|571
3JCS|1|2|A2M|572
3JCS|1|2|U|573

Current chains

Chain 2

26S delta ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA