IL_3JCS_119
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUCUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 3JCS|1|4|U|84, 3JCS|1|4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JCS_119 not in the Motif Atlas
- Homologous match to IL_8C3A_127
- Geometric discrepancy: 0.1494
- The information below is about IL_8C3A_127
- Detailed Annotation
- UAA/GAN related
- Broad Annotation
- UAA/GAN related
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
3JCS|1|4|U|82
3JCS|1|4|U|83
3JCS|1|4|U|84
3JCS|1|4|C|85
3JCS|1|4|U|86
3JCS|1|4|G|87
*
3JCS|1|4|C|112
3JCS|1|4|G|113
3JCS|1|4|A|114
3JCS|1|4|A|115
3JCS|1|4|G|116
Current chains
- Chain 4
- 26S delta ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- 26S epsilon ribosomal RNA
- Chain B
- ribosomal protein L3
- Chain X
- ribosomal protein L24e
- Chain e
- ribosomal protein L31e
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