IL_3PIO_058

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

3PIO|1|X|U|1601, 3PIO|1|X|G|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3PIO_058 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.3109

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

3PIO|1|X|U|1426
3PIO|1|X|G|1427
3PIO|1|X|G|1428
3PIO|1|X|A|1429
3PIO|1|X|G|1430
*
3PIO|1|X|C|1598
3PIO|1|X|G|1599
3PIO|1|X|U|1600
3PIO|1|X|U|1601
3PIO|1|X|G|1602
3PIO|1|X|A|1603
3PIO|1|X|A|1604
3PIO|1|X|A|1605

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains