IL_4A2I_038

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4A2I|1|A|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4A2I_038 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1111

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4A2I|1|A|U|684
4A2I|1|A|G|685
4A2I|1|A|U|686
4A2I|1|A|A|687
4A2I|1|A|G|688
*
4A2I|1|A|C|699
4A2I|1|A|G|700
4A2I|1|A|U|701
4A2I|1|A|A|702
4A2I|1|A|G|703
4A2I|1|A|A|704
4A2I|1|A|G|705
4A2I|1|A|A|706

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain K

30S RIBOSOMAL PROTEIN S11

Chain V

PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA