IL_4A2I_059

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4A2I_059 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1395

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4A2I|1|A|C|1303
4A2I|1|A|G|1304
4A2I|1|A|G|1305
4A2I|1|A|A|1306
4A2I|1|A|U|1307
4A2I|1|A|U|1308
*
4A2I|1|A|A|1329
4A2I|1|A|U|1330
4A2I|1|A|G|1331
4A2I|1|A|A|1332
4A2I|1|A|A|1333
4A2I|1|A|G|1334

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain M

30S RIBOSOMAL PROTEIN S13