IL_4ADV_028

3D structure

PDB id

4ADV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4ADV|1|A|A|532, 4ADV|1|A|U|534, 4ADV|1|A|A|535

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ADV_028 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1446

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4ADV|1|A|G|515
4ADV|1|A|U|516
4ADV|1|A|G|517
4ADV|1|A|C|518
4ADV|1|A|C|519
4ADV|1|A|A|520
4ADV|1|A|G|521
*
4ADV|1|A|C|528
4ADV|1|A|G|529
4ADV|1|A|G|530
4ADV|1|A|U|531
4ADV|1|A|A|532
4ADV|1|A|A|533
4ADV|1|A|U|534
4ADV|1|A|A|535
4ADV|1|A|C|536

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain L

30S RIBOSOMAL PROTEIN S12