IL_4ADV_038

3D structure

PDB id

4ADV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4ADV|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ADV_038 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1111

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4ADV|1|A|U|684
4ADV|1|A|G|685
4ADV|1|A|U|686
4ADV|1|A|A|687
4ADV|1|A|G|688
*
4ADV|1|A|C|699
4ADV|1|A|G|700
4ADV|1|A|U|701
4ADV|1|A|A|702
4ADV|1|A|G|703
4ADV|1|A|A|704
4ADV|1|A|G|705
4ADV|1|A|A|706

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain K

30S RIBOSOMAL PROTEIN S11