IL_4CSU_075

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

4CSU|1|B|A|1801, 4CSU|1|B|C|1816, 4CSU|1|B|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_075 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1739

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4CSU|1|B|U|1798
4CSU|1|B|G|1799
4CSU|1|B|C|1800
4CSU|1|B|A|1801
4CSU|1|B|A|1802
4CSU|1|B|A|1803
4CSU|1|B|C|1804
*
4CSU|1|B|G|1813
4CSU|1|B|G|1814
4CSU|1|B|A|1815
4CSU|1|B|C|1816
4CSU|1|B|G|1817
4CSU|1|B|U|1818
4CSU|1|B|A|1819
4CSU|1|B|U|1820
4CSU|1|B|A|1821

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2