IL_4CUV_166

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

4CUV|1|1|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CUV_166 not in the Motif Atlas

Geometric match to IL_8CRE_082

Geometric discrepancy: 0.0739

The information below is about IL_8CRE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4CUV|1|1|G|1898
4CUV|1|1|G|1899
4CUV|1|1|A|1900
4CUV|1|1|A|1901
4CUV|1|1|G|1902
4CUV|1|1|U|1903
4CUV|1|1|C|1904
4CUV|1|1|G|1905
4CUV|1|1|G|1906
*
4CUV|1|1|C|2333
4CUV|1|1|U|2334
4CUV|1|1|G|2335
4CUV|1|1|U|2336
4CUV|1|1|C|2337

Current chains

Chain 1

25S RRNA

Nearby chains