IL_4CUX_104

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

4CUX|1|2|U|313, 4CUX|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CUX_104 not in the Motif Atlas

Geometric match to IL_8CRE_408

Geometric discrepancy: 0.1357

The information below is about IL_8CRE_408

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

4CUX|1|2|U|311
4CUX|1|2|A|312
4CUX|1|2|U|313
4CUX|1|2|C|314
4CUX|1|2|A|315
4CUX|1|2|A|316
*
4CUX|1|2|U|348
4CUX|1|2|U|349
4CUX|1|2|U|350
4CUX|1|2|C|351
4CUX|1|2|A|352
4CUX|1|2|A|353
4CUX|1|2|C|354
4CUX|1|2|G|355

Current chains

Chain 2

18S RRNA

Nearby chains