IL_4CXE_143

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_143 not in the Motif Atlas

Geometric match to IL_1MZP_003

Geometric discrepancy: 0.2267

The information below is about IL_1MZP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4CXE|1|2|G|3939
4CXE|1|2|G|3940
4CXE|1|2|A|3941
4CXE|1|2|G|3942
*
4CXE|1|2|C|4006
4CXE|1|2|G|4007
4CXE|1|2|C|4008
4CXE|1|2|C|4009
4CXE|1|2|G|4010
4CXE|1|2|G|4011
4CXE|1|2|U|4012
4CXE|1|2|G|4013
4CXE|1|2|A|4014
4CXE|1|2|A|4015
4CXE|1|2|A|4016
4CXE|1|2|U|4017
4CXE|1|2|A|4018
4CXE|1|2|C|4019

Current chains

Chain 2

28S RRNA

Nearby chains