IL_4CXE_167

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

4CXE|1|2|U|4594, 4CXE|1|2|U|4596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_167 not in the Motif Atlas

Geometric match to IL_8P9A_346

Geometric discrepancy: 0.1911

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98200.2

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

4

Unit IDs

4CXE|1|2|U|4592
4CXE|1|2|G|4593
4CXE|1|2|U|4594
4CXE|1|2|A|4595
4CXE|1|2|U|4596
4CXE|1|2|G|4597
*
4CXE|1|2|C|4622
4CXE|1|2|G|4623
4CXE|1|2|A|4624
4CXE|1|2|A|4625
4CXE|1|2|G|4626

Current chains

Chain 2

28S RRNA

Nearby chains