IL_4CXE_191

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_191 not in the Motif Atlas

Geometric match to IL_8P9A_362

Geometric discrepancy: 0.2374

The information below is about IL_8P9A_362

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

4CXE|1|2|A|4969
4CXE|1|2|G|4970
4CXE|1|2|A|4971
4CXE|1|2|G|4972
*
4CXE|1|2|C|4987
4CXE|1|2|G|4988
4CXE|1|2|A|4989
4CXE|1|2|U|4990

Current chains

Chain 2

28S RRNA

Nearby chains