IL_4D5L_014
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 4D5L|1|1|U|361, 4D5L|1|1|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5L_014 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1551
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
4D5L|1|1|U|359
4D5L|1|1|A|360
4D5L|1|1|U|361
4D5L|1|1|C|362
4D5L|1|1|A|363
4D5L|1|1|A|364
*
4D5L|1|1|U|396
4D5L|1|1|G|397
4D5L|1|1|A|398
4D5L|1|1|C|399
4D5L|1|1|C|400
4D5L|1|1|A|401
4D5L|1|1|C|402
4D5L|1|1|G|403
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain I
- 40S RIBOSOMAL PROTEIN ES8
- Chain L
- 40S RIBOSOMAL PROTEIN US17
- Chain X
- 40S RIBOSOMAL PROTEIN US12
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