IL_4D5L_026
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 4D5L|1|1|G|626, 4D5L|1|1|A|628, 4D5L|1|1|U|630, 4D5L|1|1|U|631
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5L_026 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.2248
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4D5L|1|1|G|611
4D5L|1|1|U|612
4D5L|1|1|G|613
4D5L|1|1|C|614
4D5L|1|1|C|615
4D5L|1|1|A|616
4D5L|1|1|G|617
*
4D5L|1|1|C|624
4D5L|1|1|G|625
4D5L|1|1|G|626
4D5L|1|1|U|627
4D5L|1|1|A|628
4D5L|1|1|A|629
4D5L|1|1|U|630
4D5L|1|1|U|631
4D5L|1|1|C|632
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain D
- 40S RIBOSOMAL PROTEIN US14
- Chain X
- 40S RIBOSOMAL PROTEIN US12
- Chain e
- 40S RIBOSOMAL PROTEIN ES4
Coloring options: