IL_4D5L_039

3D structure

PDB id

4D5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

4D5L|1|1|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5L_039 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.1647

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4D5L|1|1|C|931
4D5L|1|1|G|932
4D5L|1|1|G|933
4D5L|1|1|G|934
4D5L|1|1|G|935
*
4D5L|1|1|C|1007
4D5L|1|1|A|1008
4D5L|1|1|A|1009
4D5L|1|1|G|1010

Current chains

Chain 1

18S RRNA 2

Nearby chains

Chain B

40S RIBOSOMAL PROTEIN ES27

Chain N

40S RIBOSOMAL PROTEIN US15

Chain a

40S RIBOSOMAL PROTEIN US2