3D structure

PDB id
4D5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
Experimental method
ELECTRON MICROSCOPY
Resolution
9 Å

Loop

Sequence
CGCU*AAAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4D5L_074 not in the Motif Atlas
Geometric match to IL_4V88_466
Geometric discrepancy: 0.3401
The information below is about IL_4V88_466
Detailed Annotation
Non canonical cWW and near pair
Broad Annotation
Non canonical cWW and near pair
Motif group
IL_90170.1
Basepair signature
cWW-L-R-L-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4D5L|1|1|C|1708
4D5L|1|1|G|1709
4D5L|1|1|C|1710
4D5L|1|1|U|1711
*
4D5L|1|1|A|1822
4D5L|1|1|A|1823
4D5L|1|1|A|1824
4D5L|1|1|A|1825
4D5L|1|1|G|1826

Current chains

Chain 1
18S RRNA 2

Nearby chains

Chain X
40S RIBOSOMAL PROTEIN US12

Coloring options:


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