IL_4D5Y_051
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CCGGUAA*UAAAUGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_051 not in the Motif Atlas
- Geometric match to IL_5TBW_038
- Geometric discrepancy: 0.1644
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4D5Y|1|2|C|1710
4D5Y|1|2|C|1711
4D5Y|1|2|G|1712
4D5Y|1|2|G|1713
4D5Y|1|2|U|1714
4D5Y|1|2|A|1715
4D5Y|1|2|A|1716
*
4D5Y|1|2|U|1771
4D5Y|1|2|A|1772
4D5Y|1|2|A|1773
4D5Y|1|2|A|1774
4D5Y|1|2|U|1775
4D5Y|1|2|G|1776
4D5Y|1|2|G|1777
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain 4
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S RIBOSOMAL PROTEIN UL30
- Chain I
- 60S RIBOSOMAL PROTEIN UL16
- Chain T
- 60S RIBOSOMAL PROTEIN EL21
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