IL_4D5Y_084

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5Y_084 not in the Motif Atlas

Homologous match to IL_5TBW_074

Geometric discrepancy: 0.1896

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4D5Y|1|2|A|2809
4D5Y|1|2|A|2810
4D5Y|1|2|C|2811
4D5Y|1|2|A|2812
4D5Y|1|2|A|2813
4D5Y|1|2|U|2814
4D5Y|1|2|G|2815
*
4D5Y|1|2|C|3819
4D5Y|1|2|U|3820
4D5Y|1|2|A|3821
4D5Y|1|2|U|3822

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN UL3

Chain P

60S RIBOSOMAL PROTEIN UL22

Chain d

60S RIBOSOMAL PROTEIN EL31