IL_4D5Y_205

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

4D5Y|1|2|G|5004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5Y_205 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1486

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4D5Y|1|2|G|4955
4D5Y|1|2|U|4956
4D5Y|1|2|U|4957
*
4D5Y|1|2|G|5000
4D5Y|1|2|U|5001
4D5Y|1|2|C|5002
4D5Y|1|2|A|5003
4D5Y|1|2|G|5004
4D5Y|1|2|C|5005

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN UL3

Chain d

60S RIBOSOMAL PROTEIN EL31